The CDD [ http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml ] and the its search tool [ http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi ] has been recently updated. Also check out the latest approach for "automatically assigning subcellular locations" to protein from Newberg and Murphy [ http://pubs.acs.org/cgi-bin/abstract.cgi/jprobs/asap/abs/pr7007626.html].
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